I have installed v2 and copied my v1 pages into it but it is neither generating the TOC (Table of Contents) at the top of page nor the back-links at the bottom.
Of possible note, on first launch v2 starts with an on-boarding page. The page was displayed as raw HTML and looked to contain a script? After reading the page, as best i could, i complied with the instructions and replaced it with my index page from v1.
Any advice on enabling them is greatly appreciated.
Did you let all content sync all the way? It will only be activated after a full sync cycle. Have a look at your browser’s JavaScript logs. Perhaps there’s hints of something breaking there.